chore: bump version to 2.11.1

- Fix 'already exists, skipping migration' logic that left repositories with incorrect 'imported' status
- Update database status to 'mirrored' when repository already exists in Gitea
- Add automatic startup repair to fix existing inconsistencies on container start
- Create diagnostic and repair tools for troubleshooting mirroring issues
- Ensure consistent state between Gitea and application database

Resolves issue where repositories showed successful mirroring logs but remained
in 'imported' status, causing UI confusion and preventing proper status tracking.

Changes:
- src/lib/gitea.ts: Fixed mirrorGithubRepoToGitea() and mirrorGitHubRepoToGiteaOrg()
- docker-entrypoint.sh: Added automatic repository status repair on startup
- scripts/investigate-repo.ts: New diagnostic tool for repository analysis
- scripts/repair-mirrored-repos.ts: New repair tool with startup mode support
- scripts/cleanup-duplicate-repos.ts: New tool for removing duplicate entries

Fixes multiple user reports of misleading 'successfully mirrored' logs
while repositories remained in inconsistent state.

README.md

@@ -513,6 +513,36 @@ Try the following steps:
 >
 > This setup provides a complete containerized deployment for the Gitea Mirror application.
 
+#### Docker Volume Types and Permissions
+
+> [!IMPORTANT]
+> **Named Volumes vs Bind Mounts**: If you encounter SQLite permission errors even when using Docker, check your volume configuration:
+
+**✅ Named Volumes (Recommended):**
+```yaml
+volumes:
+  - gitea-mirror-data:/app/data  # Docker manages permissions automatically
+```
+
+**⚠️ Bind Mounts (Requires Manual Permission Setup):**
+```yaml
+volumes:
+  - /host/path/to/data:/app/data  # Host filesystem permissions apply
+```
+
+**If using bind mounts**, ensure the host directory is owned by UID 1001 (the `gitea-mirror` user):
+```bash
+# Set correct ownership for bind mount
+sudo chown -R 1001:1001 /host/path/to/data
+sudo chmod -R 755 /host/path/to/data
+```
+
+**Why named volumes work better:**
+- Docker automatically handles permissions
+- Better portability across different hosts
+- No manual permission setup required
+- Used by our official docker-compose.yml
+
 
 #### Database Maintenance
 

docker-entrypoint.sh

@@ -232,6 +232,28 @@ else
   echo "❌ Startup recovery failed with exit code $RECOVERY_EXIT_CODE"
 fi
 
+# Run repository status repair to fix any inconsistent mirroring states
+echo "Running repository status repair..."
+if [ -f "dist/scripts/repair-mirrored-repos.js" ]; then
+  echo "Running repository repair using compiled script..."
+  bun dist/scripts/repair-mirrored-repos.js --startup
+  REPAIR_EXIT_CODE=$?
+elif [ -f "scripts/repair-mirrored-repos.ts" ]; then
+  echo "Running repository repair using TypeScript script..."
+  bun scripts/repair-mirrored-repos.ts --startup
+  REPAIR_EXIT_CODE=$?
+else
+  echo "Warning: Repository repair script not found. Skipping repair."
+  REPAIR_EXIT_CODE=0
+fi
+
+# Log repair result
+if [ $REPAIR_EXIT_CODE -eq 0 ]; then
+  echo "✅ Repository status repair completed successfully"
+else
+  echo "⚠️  Repository status repair completed with warnings (exit code $REPAIR_EXIT_CODE)"
+fi
+
 # Function to handle shutdown signals
 shutdown_handler() {
   echo "🛑 Received shutdown signal, forwarding to application..."

package.json

@@ -1,7 +1,7 @@
 {
   "name": "gitea-mirror",
   "type": "module",
-  "version": "2.10.0",
+  "version": "2.11.1",
   "engines": {
     "bun": ">=1.2.9"
   },

scripts/cleanup-duplicate-repos.ts

@@ -0,0 +1,129 @@
+#!/usr/bin/env bun
+
+/**
+ * Script to find and clean up duplicate repositories in the database
+ * Keeps the most recent entry and removes older duplicates
+ * 
+ * Usage: bun scripts/cleanup-duplicate-repos.ts [--dry-run] [--repo-name=<name>]
+ */
+
+import { db, repositories, mirrorJobs } from "@/lib/db";
+import { eq, and, desc } from "drizzle-orm";
+
+const isDryRun = process.argv.includes("--dry-run");
+const specificRepo = process.argv.find(arg => arg.startsWith("--repo-name="))?.split("=")[1];
+
+async function findDuplicateRepositories() {
+  console.log("🔍 Finding duplicate repositories");
+  console.log("=" .repeat(40));
+  
+  if (isDryRun) {
+    console.log("🔍 DRY RUN MODE - No changes will be made");
+    console.log("");
+  }
+
+  if (specificRepo) {
+    console.log(`🎯 Targeting specific repository: ${specificRepo}`);
+    console.log("");
+  }
+
+  try {
+    // Find all repositories, grouped by name and fullName
+    let allRepos = await db.select().from(repositories);
+
+    if (specificRepo) {
+      allRepos = allRepos.filter(repo => repo.name === specificRepo);
+    }
+
+    // Group repositories by name and fullName
+    const repoGroups = new Map<string, typeof allRepos>();
+    
+    for (const repo of allRepos) {
+      const key = `${repo.name}|${repo.fullName}`;
+      if (!repoGroups.has(key)) {
+        repoGroups.set(key, []);
+      }
+      repoGroups.get(key)!.push(repo);
+    }
+
+    // Find groups with duplicates
+    const duplicateGroups = Array.from(repoGroups.entries())
+      .filter(([_, repos]) => repos.length > 1);
+
+    if (duplicateGroups.length === 0) {
+      console.log("✅ No duplicate repositories found");
+      return;
+    }
+
+    console.log(`📋 Found ${duplicateGroups.length} sets of duplicate repositories:`);
+    console.log("");
+
+    let totalDuplicates = 0;
+    let totalRemoved = 0;
+
+    for (const [key, repos] of duplicateGroups) {
+      const [name, fullName] = key.split("|");
+      console.log(`🔄 Processing duplicates for: ${name} (${fullName})`);
+      console.log(`   Found ${repos.length} entries:`);
+
+      // Sort by updatedAt descending to keep the most recent
+      repos.sort((a, b) => new Date(b.updatedAt).getTime() - new Date(a.updatedAt).getTime());
+
+      const keepRepo = repos[0];
+      const removeRepos = repos.slice(1);
+
+      console.log(`   ✅ Keeping: ID ${keepRepo.id} (Status: ${keepRepo.status}, Updated: ${new Date(keepRepo.updatedAt).toISOString()})`);
+
+      for (const repo of removeRepos) {
+        console.log(`   ❌ Removing: ID ${repo.id} (Status: ${repo.status}, Updated: ${new Date(repo.updatedAt).toISOString()})`);
+        
+        if (!isDryRun) {
+          try {
+            // First, delete related mirror jobs
+            await db
+              .delete(mirrorJobs)
+              .where(eq(mirrorJobs.repositoryId, repo.id!));
+
+            // Then delete the repository
+            await db
+              .delete(repositories)
+              .where(eq(repositories.id, repo.id!));
+
+            console.log(`     🗑️  Deleted repository and related mirror jobs`);
+            totalRemoved++;
+          } catch (error) {
+            console.log(`     ❌ Error deleting repository: ${error instanceof Error ? error.message : String(error)}`);
+          }
+        } else {
+          console.log(`     🗑️  Would delete repository and related mirror jobs`);
+          totalRemoved++;
+        }
+      }
+
+      totalDuplicates += removeRepos.length;
+      console.log("");
+    }
+
+    console.log("📊 Cleanup Summary:");
+    console.log(`   Duplicate sets found: ${duplicateGroups.length}`);
+    console.log(`   Total duplicates: ${totalDuplicates}`);
+    console.log(`   ${isDryRun ? 'Would remove' : 'Removed'}: ${totalRemoved}`);
+
+    if (isDryRun && totalRemoved > 0) {
+      console.log("");
+      console.log("💡 To apply these changes, run the script without --dry-run");
+    }
+
+  } catch (error) {
+    console.error("❌ Error during cleanup process:", error);
+  }
+}
+
+// Run the cleanup
+findDuplicateRepositories().then(() => {
+  console.log("Cleanup process complete.");
+  process.exit(0);
+}).catch((error) => {
+  console.error("Fatal error:", error);
+  process.exit(1);
+});

scripts/investigate-repo.ts

@@ -0,0 +1,178 @@
+#!/usr/bin/env bun
+
+/**
+ * Script to investigate a specific repository's mirroring status
+ * Usage: bun scripts/investigate-repo.ts [repository-name]
+ */
+
+import { db, repositories, mirrorJobs, configs } from "@/lib/db";
+import { eq, desc, and } from "drizzle-orm";
+
+const repoName = process.argv[2] || "EruditionPaper";
+
+async function investigateRepository() {
+  console.log(`🔍 Investigating repository: ${repoName}`);
+  console.log("=" .repeat(50));
+
+  try {
+    // Find the repository in the database
+    const repos = await db
+      .select()
+      .from(repositories)
+      .where(eq(repositories.name, repoName));
+
+    if (repos.length === 0) {
+      console.log(`❌ Repository "${repoName}" not found in database`);
+      return;
+    }
+
+    const repo = repos[0];
+    console.log(`✅ Found repository: ${repo.name}`);
+    console.log(`   ID: ${repo.id}`);
+    console.log(`   Full Name: ${repo.fullName}`);
+    console.log(`   Owner: ${repo.owner}`);
+    console.log(`   Organization: ${repo.organization || "None"}`);
+    console.log(`   Status: ${repo.status}`);
+    console.log(`   Is Private: ${repo.isPrivate}`);
+    console.log(`   Is Forked: ${repo.isForked}`);
+    console.log(`   Mirrored Location: ${repo.mirroredLocation || "Not set"}`);
+    console.log(`   Last Mirrored: ${repo.lastMirrored ? new Date(repo.lastMirrored).toISOString() : "Never"}`);
+    console.log(`   Error Message: ${repo.errorMessage || "None"}`);
+    console.log(`   Created At: ${new Date(repo.createdAt).toISOString()}`);
+    console.log(`   Updated At: ${new Date(repo.updatedAt).toISOString()}`);
+
+    console.log("\n📋 Recent Mirror Jobs:");
+    console.log("-".repeat(30));
+
+    // Find recent mirror jobs for this repository
+    const jobs = await db
+      .select()
+      .from(mirrorJobs)
+      .where(eq(mirrorJobs.repositoryId, repo.id))
+      .orderBy(desc(mirrorJobs.timestamp))
+      .limit(10);
+
+    if (jobs.length === 0) {
+      console.log("   No mirror jobs found for this repository");
+    } else {
+      jobs.forEach((job, index) => {
+        console.log(`   ${index + 1}. ${new Date(job.timestamp).toISOString()}`);
+        console.log(`      Status: ${job.status}`);
+        console.log(`      Message: ${job.message}`);
+        if (job.details) {
+          console.log(`      Details: ${job.details}`);
+        }
+        console.log("");
+      });
+    }
+
+    // Get user configuration
+    console.log("⚙️ User Configuration:");
+    console.log("-".repeat(20));
+
+    const config = await db
+      .select()
+      .from(configs)
+      .where(eq(configs.id, repo.configId))
+      .limit(1);
+
+    if (config.length > 0) {
+      const userConfig = config[0];
+      console.log(`   User ID: ${userConfig.userId}`);
+      console.log(`   GitHub Username: ${userConfig.githubConfig?.username || "Not set"}`);
+      console.log(`   Gitea URL: ${userConfig.giteaConfig?.url || "Not set"}`);
+      console.log(`   Gitea Username: ${userConfig.giteaConfig?.username || "Not set"}`);
+      console.log(`   Preserve Org Structure: ${userConfig.githubConfig?.preserveOrgStructure || false}`);
+      console.log(`   Mirror Issues: ${userConfig.githubConfig?.mirrorIssues || false}`);
+    }
+
+    // Check for any active jobs
+    console.log("\n🔄 Active Jobs:");
+    console.log("-".repeat(15));
+
+    const activeJobs = await db
+      .select()
+      .from(mirrorJobs)
+      .where(
+        and(
+          eq(mirrorJobs.repositoryId, repo.id),
+          eq(mirrorJobs.inProgress, true)
+        )
+      );
+
+    if (activeJobs.length === 0) {
+      console.log("   No active jobs found");
+    } else {
+      activeJobs.forEach((job, index) => {
+        console.log(`   ${index + 1}. Job ID: ${job.id}`);
+        console.log(`      Type: ${job.jobType || "mirror"}`);
+        console.log(`      Batch ID: ${job.batchId || "None"}`);
+        console.log(`      Started: ${job.startedAt ? new Date(job.startedAt).toISOString() : "Unknown"}`);
+        console.log(`      Last Checkpoint: ${job.lastCheckpoint ? new Date(job.lastCheckpoint).toISOString() : "None"}`);
+        console.log(`      Progress: ${job.completedItems || 0}/${job.totalItems || 0}`);
+        console.log("");
+      });
+    }
+
+    // Check if repository exists in Gitea
+    if (config.length > 0) {
+      const userConfig = config[0];
+      console.log("\n🔗 Gitea Repository Check:");
+      console.log("-".repeat(25));
+
+      try {
+        const giteaUrl = userConfig.giteaConfig?.url;
+        const giteaToken = userConfig.giteaConfig?.token;
+        const giteaUsername = userConfig.giteaConfig?.username;
+
+        if (giteaUrl && giteaToken && giteaUsername) {
+          const checkUrl = `${giteaUrl}/api/v1/repos/${giteaUsername}/${repo.name}`;
+          console.log(`   Checking: ${checkUrl}`);
+
+          const response = await fetch(checkUrl, {
+            headers: {
+              Authorization: `token ${giteaToken}`,
+            },
+          });
+
+          console.log(`   Response Status: ${response.status} ${response.statusText}`);
+
+          if (response.ok) {
+            const repoData = await response.json();
+            console.log(`   ✅ Repository exists in Gitea`);
+            console.log(`   Name: ${repoData.name}`);
+            console.log(`   Full Name: ${repoData.full_name}`);
+            console.log(`   Private: ${repoData.private}`);
+            console.log(`   Mirror: ${repoData.mirror}`);
+            console.log(`   Clone URL: ${repoData.clone_url}`);
+            console.log(`   Created: ${new Date(repoData.created_at).toISOString()}`);
+            console.log(`   Updated: ${new Date(repoData.updated_at).toISOString()}`);
+            if (repoData.mirror_updated) {
+              console.log(`   Mirror Updated: ${new Date(repoData.mirror_updated).toISOString()}`);
+            }
+          } else {
+            console.log(`   ❌ Repository not found in Gitea`);
+            const errorText = await response.text();
+            console.log(`   Error: ${errorText}`);
+          }
+        } else {
+          console.log("   ⚠️ Missing Gitea configuration");
+        }
+      } catch (error) {
+        console.log(`   ❌ Error checking Gitea: ${error instanceof Error ? error.message : String(error)}`);
+      }
+    }
+
+  } catch (error) {
+    console.error("❌ Error investigating repository:", error);
+  }
+}
+
+// Run the investigation
+investigateRepository().then(() => {
+  console.log("Investigation complete.");
+  process.exit(0);
+}).catch((error) => {
+  console.error("Fatal error:", error);
+  process.exit(1);
+});

scripts/repair-mirrored-repos.ts

@@ -0,0 +1,277 @@
+#!/usr/bin/env bun
+
+/**
+ * Script to repair repositories that exist in Gitea but have incorrect status in the database
+ * This fixes the issue where repositories show as "imported" but are actually mirrored in Gitea
+ * 
+ * Usage: bun scripts/repair-mirrored-repos.ts [--dry-run] [--repo-name=<name>]
+ */
+
+import { db, repositories, configs } from "@/lib/db";
+import { eq, and, or } from "drizzle-orm";
+import { createMirrorJob } from "@/lib/helpers";
+import { repoStatusEnum } from "@/types/Repository";
+
+const isDryRun = process.argv.includes("--dry-run");
+const specificRepo = process.argv.find(arg => arg.startsWith("--repo-name="))?.split("=")[1];
+const isStartupMode = process.argv.includes("--startup");
+
+async function checkRepoInGitea(config: any, owner: string, repoName: string): Promise<boolean> {
+  try {
+    if (!config.giteaConfig?.url || !config.giteaConfig?.token) {
+      return false;
+    }
+
+    const response = await fetch(
+      `${config.giteaConfig.url}/api/v1/repos/${owner}/${repoName}`,
+      {
+        headers: {
+          Authorization: `token ${config.giteaConfig.token}`,
+        },
+      }
+    );
+
+    return response.ok;
+  } catch (error) {
+    console.error(`Error checking repo ${owner}/${repoName} in Gitea:`, error);
+    return false;
+  }
+}
+
+async function getRepoDetailsFromGitea(config: any, owner: string, repoName: string): Promise<any> {
+  try {
+    if (!config.giteaConfig?.url || !config.giteaConfig?.token) {
+      return null;
+    }
+
+    const response = await fetch(
+      `${config.giteaConfig.url}/api/v1/repos/${owner}/${repoName}`,
+      {
+        headers: {
+          Authorization: `token ${config.giteaConfig.token}`,
+        },
+      }
+    );
+
+    if (response.ok) {
+      return await response.json();
+    }
+    return null;
+  } catch (error) {
+    console.error(`Error getting repo details for ${owner}/${repoName}:`, error);
+    return null;
+  }
+}
+
+async function repairMirroredRepositories() {
+  if (!isStartupMode) {
+    console.log("🔧 Repairing mirrored repositories database status");
+    console.log("=" .repeat(60));
+
+    if (isDryRun) {
+      console.log("🔍 DRY RUN MODE - No changes will be made");
+      console.log("");
+    }
+
+    if (specificRepo) {
+      console.log(`🎯 Targeting specific repository: ${specificRepo}`);
+      console.log("");
+    }
+  }
+
+  try {
+    // Find repositories that might need repair
+    let query = db
+      .select()
+      .from(repositories)
+      .where(
+        or(
+          eq(repositories.status, "imported"),
+          eq(repositories.status, "failed")
+        )
+      );
+
+    if (specificRepo) {
+      query = query.where(eq(repositories.name, specificRepo));
+    }
+
+    const repos = await query;
+
+    if (repos.length === 0) {
+      if (!isStartupMode) {
+        console.log("✅ No repositories found that need repair");
+      }
+      return;
+    }
+
+    if (!isStartupMode) {
+      console.log(`📋 Found ${repos.length} repositories to check:`);
+      console.log("");
+    }
+
+    let repairedCount = 0;
+    let skippedCount = 0;
+    let errorCount = 0;
+
+    for (const repo of repos) {
+      if (!isStartupMode) {
+        console.log(`🔍 Checking repository: ${repo.name}`);
+        console.log(`   Current status: ${repo.status}`);
+        console.log(`   Mirrored location: ${repo.mirroredLocation || "Not set"}`);
+      }
+
+      try {
+        // Get user configuration
+        const config = await db
+          .select()
+          .from(configs)
+          .where(eq(configs.id, repo.configId))
+          .limit(1);
+
+        if (config.length === 0) {
+          if (!isStartupMode) {
+            console.log(`   ❌ No configuration found for repository`);
+          }
+          errorCount++;
+          continue;
+        }
+
+        const userConfig = config[0];
+        const giteaUsername = userConfig.giteaConfig?.username;
+
+        if (!giteaUsername) {
+          if (!isStartupMode) {
+            console.log(`   ❌ No Gitea username in configuration`);
+          }
+          errorCount++;
+          continue;
+        }
+
+        // Check if repository exists in Gitea (try both user and organization)
+        let existsInGitea = false;
+        let actualOwner = giteaUsername;
+        let giteaRepoDetails = null;
+
+        // First check user location
+        existsInGitea = await checkRepoInGitea(userConfig, giteaUsername, repo.name);
+        if (existsInGitea) {
+          giteaRepoDetails = await getRepoDetailsFromGitea(userConfig, giteaUsername, repo.name);
+        }
+
+        // If not found in user location and repo has organization, check organization
+        if (!existsInGitea && repo.organization) {
+          existsInGitea = await checkRepoInGitea(userConfig, repo.organization, repo.name);
+          if (existsInGitea) {
+            actualOwner = repo.organization;
+            giteaRepoDetails = await getRepoDetailsFromGitea(userConfig, repo.organization, repo.name);
+          }
+        }
+
+        if (!existsInGitea) {
+          if (!isStartupMode) {
+            console.log(`   ⏭️  Repository not found in Gitea - skipping`);
+          }
+          skippedCount++;
+          continue;
+        }
+
+        if (!isStartupMode) {
+          console.log(`   ✅ Repository found in Gitea at: ${actualOwner}/${repo.name}`);
+
+          if (giteaRepoDetails) {
+            console.log(`   📊 Gitea details:`);
+            console.log(`      Mirror: ${giteaRepoDetails.mirror}`);
+            console.log(`      Created: ${new Date(giteaRepoDetails.created_at).toISOString()}`);
+            console.log(`      Updated: ${new Date(giteaRepoDetails.updated_at).toISOString()}`);
+            if (giteaRepoDetails.mirror_updated) {
+              console.log(`      Mirror Updated: ${new Date(giteaRepoDetails.mirror_updated).toISOString()}`);
+            }
+          }
+        } else if (repairedCount === 0) {
+          // In startup mode, only log the first repair to indicate activity
+          console.log(`Repairing repository status inconsistencies...`);
+        }
+
+        if (!isDryRun) {
+          // Update repository status in database
+          const mirrorUpdated = giteaRepoDetails?.mirror_updated 
+            ? new Date(giteaRepoDetails.mirror_updated)
+            : new Date();
+
+          await db
+            .update(repositories)
+            .set({
+              status: repoStatusEnum.parse("mirrored"),
+              updatedAt: new Date(),
+              lastMirrored: mirrorUpdated,
+              errorMessage: null,
+              mirroredLocation: `${actualOwner}/${repo.name}`,
+            })
+            .where(eq(repositories.id, repo.id!));
+
+          // Create a mirror job log entry
+          await createMirrorJob({
+            userId: userConfig.userId || "",
+            repositoryId: repo.id,
+            repositoryName: repo.name,
+            message: `Repository status repaired - found existing mirror in Gitea`,
+            details: `Repository ${repo.name} was found to already exist in Gitea at ${actualOwner}/${repo.name} and database status was updated from ${repo.status} to mirrored.`,
+            status: "mirrored",
+          });
+
+          if (!isStartupMode) {
+            console.log(`   🔧 Repaired: Updated status to 'mirrored'`);
+          }
+        } else {
+          if (!isStartupMode) {
+            console.log(`   🔧 Would repair: Update status from '${repo.status}' to 'mirrored'`);
+          }
+        }
+
+        repairedCount++;
+
+      } catch (error) {
+        if (!isStartupMode) {
+          console.log(`   ❌ Error processing repository: ${error instanceof Error ? error.message : String(error)}`);
+        }
+        errorCount++;
+      }
+
+      if (!isStartupMode) {
+        console.log("");
+      }
+    }
+
+    if (isStartupMode) {
+      // In startup mode, only log if there were repairs or errors
+      if (repairedCount > 0) {
+        console.log(`Repaired ${repairedCount} repository status inconsistencies`);
+      }
+      if (errorCount > 0) {
+        console.log(`Warning: ${errorCount} repositories had errors during repair`);
+      }
+    } else {
+      console.log("📊 Repair Summary:");
+      console.log(`   Repaired: ${repairedCount}`);
+      console.log(`   Skipped: ${skippedCount}`);
+      console.log(`   Errors: ${errorCount}`);
+
+      if (isDryRun && repairedCount > 0) {
+        console.log("");
+        console.log("💡 To apply these changes, run the script without --dry-run");
+      }
+    }
+
+  } catch (error) {
+    console.error("❌ Error during repair process:", error);
+  }
+}
+
+// Run the repair
+repairMirroredRepositories().then(() => {
+  console.log("Repair process complete.");
+  process.exit(0);
+}).catch((error) => {
+  console.error("Fatal error:", error);
+  process.exit(1);
+});

src/components/layout/VersionInfo.tsx

@@ -37,7 +37,7 @@ export function VersionInfo() {
   return (
     <div className="text-xs text-muted-foreground text-center pt-2 pb-3 border-t border-border mt-2">
       {versionInfo.updateAvailable ? (
-        <div className="flex flex-col">
+        <div className="flex flex-col gap-1">
           <span>v{versionInfo.current}</span>
           <span className="text-primary">v{versionInfo.latest} available</span>
         </div>

src/components/organizations/Organization.tsx

@@ -1,6 +1,6 @@
 import { useCallback, useEffect, useState } from "react";
 import { Button } from "@/components/ui/button";
-import { Search, RefreshCw, FlipHorizontal, Plus } from "lucide-react";
+import { Search, RefreshCw, FlipHorizontal } from "lucide-react";
 import type { MirrorJob, Organization } from "@/lib/db/schema";
 import { OrganizationList } from "./OrganizationsList";
 import AddOrganizationDialog from "./AddOrganizationDialog";
@@ -26,6 +26,7 @@ import { useFilterParams } from "@/hooks/useFilterParams";
 import { toast } from "sonner";
 import { useConfigStatus } from "@/hooks/useConfigStatus";
 import { useNavigation } from "@/components/layout/MainLayout";
+import { useLiveRefresh } from "@/hooks/useLiveRefresh";
 
 export function Organization() {
   const [organizations, setOrganizations] = useState<Organization[]>([]);
@@ -34,6 +35,7 @@ export function Organization() {
   const { user } = useAuth();
   const { isGitHubConfigured } = useConfigStatus();
   const { navigationKey } = useNavigation();
+  const { registerRefreshCallback } = useLiveRefresh();
   const { filter, setFilter } = useFilterParams({
     searchTerm: "",
     membershipRole: "",
@@ -62,19 +64,23 @@ export function Organization() {
     onMessage: handleNewMessage,
   });
 
-  const fetchOrganizations = useCallback(async () => {
+  const fetchOrganizations = useCallback(async (isLiveRefresh = false) => {
     if (!user?.id) {
       return false;
     }
 
     // Don't fetch organizations if GitHub is not configured
     if (!isGitHubConfigured) {
+      if (!isLiveRefresh) {
         setIsLoading(false);
+      }
       return false;
     }
 
     try {
+      if (!isLiveRefresh) {
         setIsLoading(true);
+      }
 
       const response = await apiRequest<OrganizationsApiResponse>(
         `/github/organizations?userId=${user.id}`,
@@ -87,27 +93,47 @@ export function Organization() {
         setOrganizations(response.organizations);
         return true;
       } else {
+        if (!isLiveRefresh) {
           toast.error(response.error || "Error fetching organizations");
+        }
         return false;
       }
     } catch (error) {
+      if (!isLiveRefresh) {
         toast.error(
           error instanceof Error ? error.message : "Error fetching organizations"
         );
+      }
       return false;
     } finally {
+      if (!isLiveRefresh) {
         setIsLoading(false);
       }
+    }
   }, [user?.id, isGitHubConfigured]); // Only depend on user.id, not entire user object
 
   useEffect(() => {
     // Reset loading state when component becomes active
     setIsLoading(true);
-    fetchOrganizations();
+    fetchOrganizations(false); // Manual refresh, not live
   }, [fetchOrganizations, navigationKey]); // Include navigationKey to trigger on navigation
 
+  // Register with global live refresh system
+  useEffect(() => {
+    // Only register for live refresh if GitHub is configured
+    if (!isGitHubConfigured) {
+      return;
+    }
+
+    const unregister = registerRefreshCallback(() => {
+      fetchOrganizations(true); // Live refresh
+    });
+
+    return unregister;
+  }, [registerRefreshCallback, fetchOrganizations, isGitHubConfigured]);
+
   const handleRefresh = async () => {
-    const success = await fetchOrganizations();
+    const success = await fetchOrganizations(false);
     if (success) {
       toast.success("Organizations refreshed successfully.");
     }
@@ -140,6 +166,12 @@ export function Organization() {
             return updated ? updated : org;
           })
         );
+
+        // Refresh organization data to get updated repository breakdown
+        // Use a small delay to allow the backend to process the mirroring request
+        setTimeout(() => {
+          fetchOrganizations(true);
+        }, 1000);
       } else {
         toast.error(response.error || "Error starting mirror job");
       }
@@ -258,12 +290,7 @@ export function Organization() {
     }
   };
 
-  // Get unique organization names for combobox (since Organization has no owner field)
-  const ownerOptions = Array.from(
-    new Set(
-      organizations.map((org) => org.name).filter((v): v is string => !!v)
-    )
-  ).sort();
+
 
   return (
     <div className="flex flex-col gap-y-8">

src/components/organizations/OrganizationsList.tsx

@@ -172,7 +172,7 @@ export function OrganizationList({
                   htmlFor={`include-${org.id}`}
                   className="ml-2 text-sm select-none peer-disabled:cursor-not-allowed peer-disabled:opacity-70"
                 >
-                  Include in mirroring
+                  Enable mirroring
                 </label>
 
                 {isLoading && (

src/lib/gitea.ts

@@ -137,8 +137,32 @@ export const mirrorGithubRepoToGitea = async ({
 
     if (isExisting) {
       console.log(
-        `Repository ${repository.name} already exists in Gitea. Skipping migration.`
+        `Repository ${repository.name} already exists in Gitea. Updating database status.`
       );
+
+      // Update database to reflect that the repository is already mirrored
+      await db
+        .update(repositories)
+        .set({
+          status: repoStatusEnum.parse("mirrored"),
+          updatedAt: new Date(),
+          lastMirrored: new Date(),
+          errorMessage: null,
+          mirroredLocation: `${config.giteaConfig.username}/${repository.name}`,
+        })
+        .where(eq(repositories.id, repository.id!));
+
+      // Append log for "mirrored" status
+      await createMirrorJob({
+        userId: config.userId,
+        repositoryId: repository.id,
+        repositoryName: repository.name,
+        message: `Repository ${repository.name} already exists in Gitea`,
+        details: `Repository ${repository.name} was found to already exist in Gitea and database status was updated.`,
+        status: "mirrored",
+      });
+
+      console.log(`Repository ${repository.name} database status updated to mirrored`);
       return;
     }
 
@@ -420,8 +444,32 @@ export async function mirrorGitHubRepoToGiteaOrg({
 
     if (isExisting) {
       console.log(
-        `Repository ${repository.name} already exists in Gitea. Skipping migration.`
+        `Repository ${repository.name} already exists in Gitea organization ${orgName}. Updating database status.`
       );
+
+      // Update database to reflect that the repository is already mirrored
+      await db
+        .update(repositories)
+        .set({
+          status: repoStatusEnum.parse("mirrored"),
+          updatedAt: new Date(),
+          lastMirrored: new Date(),
+          errorMessage: null,
+          mirroredLocation: `${orgName}/${repository.name}`,
+        })
+        .where(eq(repositories.id, repository.id!));
+
+      // Create a mirror job log entry
+      await createMirrorJob({
+        userId: config.userId,
+        repositoryId: repository.id,
+        repositoryName: repository.name,
+        message: `Repository ${repository.name} already exists in Gitea organization ${orgName}`,
+        details: `Repository ${repository.name} was found to already exist in Gitea organization ${orgName} and database status was updated.`,
+        status: "mirrored",
+      });
+
+      console.log(`Repository ${repository.name} database status updated to mirrored in organization ${orgName}`);
       return;
     }